Bioconductor Batch correction

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2.4k

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scrna-seq integration batch correction

updated 6.1 years ago by Aaron Lun ★ 29k • written 6.1 years ago by p.joshi ▴ 40

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1.8k

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methylation ComBat Linear models batch correction AIC

updated 6.2 years ago by Kevin Blighe ★ 4.0k • written 6.2 years ago by lucasmiranda42 • 0

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1.1k

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DESeq2 batch correction

updated 6.2 years ago by James W. MacDonald 68k • written 6.2 years ago by MT ▴ 10

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1.5k

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Diffbind ATAC batch correction blocking factor

updated 6.5 years ago by Rory Stark ★ 5.3k • written 6.5 years ago by rm1238 • 0

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1.5k

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deseq2 differential expression batch correction design

updated 6.6 years ago by Michael Love 43k • written 6.7 years ago by wunderl ▴ 40

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2.1k

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deseq2 differential expression batch correction

updated 6.7 years ago by Michael Love 43k • written 6.7 years ago by wunderl ▴ 40

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2.7k

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SC3 Scater Scran scRNA-Seq Batch Correction

updated 6.8 years ago by Vladimir Kiselev ▴ 150 • written 6.8 years ago by hamza_karakurt ▴ 60

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Comment: Postdoctoral Fellow (Computational Biology / Bioinformatics) - Neuroepigenetics by mudasarnaeem2020 • 0

Promoting UDISE+ Features on Social Media to Increase Awareness https://udisseplus.com/[enter link description here][1] [1]: https://ud…

Comment: DiffBind plot.profile error by a2sahaaaq2c • 0

To resolve technical errors like installation failures or login issues, first ensure your device allows in the security settings and that…

Comment: soGGi error by shepherl 4.3k

We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…

Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k

No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.

Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0

In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …

Votes

Answer: DiffBind differential analysis

Answer: Limma-voom sample weights and impact on DEG numbers

C: Why limma, edgeR, and DESeq did not implement fold change moderation first?

Comment: using limma trend workflow in CAMERA

C: z-score with DESeq2?

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Popular Question to Guido Hooiveld ★ 4.1k